Package: MetaComp 1.1.2

Pavel Senin

MetaComp: EDGE Taxonomy Assignments Visualization

Implements routines for metagenome sample taxonomy assignments collection, aggregation, and visualization. Accepts the EDGE-formatted output from GOTTCHA/GOTTCHA2, BWA, Kraken, MetaPhlAn, DIAMOND, and Pangia. Produces SVG and PDF heatmap-like plots comparing taxa abundances across projects.

Authors:Pavel Senin [aut, cre]

MetaComp_1.1.2.tar.gz
MetaComp_1.1.2.zip(r-4.5)MetaComp_1.1.2.zip(r-4.4)MetaComp_1.1.2.zip(r-4.3)
MetaComp_1.1.2.tgz(r-4.5-any)MetaComp_1.1.2.tgz(r-4.4-any)MetaComp_1.1.2.tgz(r-4.3-any)
MetaComp_1.1.2.tar.gz(r-4.5-noble)MetaComp_1.1.2.tar.gz(r-4.4-noble)
MetaComp_1.1.2.tgz(r-4.4-emscripten)MetaComp_1.1.2.tgz(r-4.3-emscripten)
MetaComp.pdf |MetaComp.html✨
MetaComp/json (API)

# Install 'MetaComp' in R:
install.packages('MetaComp', repos = c('https://seninp-bioinfo.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/seninp-bioinfo/metacomp/issues

On CRAN:

Conda:

bioinformaticscomparative-genomicsedgeheatmapmetagenomicsvisualization

3.60 score 4 stars 7 scripts 253 downloads 2 mentions 6 exports 38 dependencies

Last updated 7 years agofrom:47d7f8536b. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 04 2025
R-4.5-winOKMar 04 2025
R-4.5-macOKFeb 02 2025
R-4.5-linuxOKMar 04 2025
R-4.4-winOKMar 04 2025
R-4.4-macOKMar 04 2025
R-4.4-linuxOKMar 04 2025
R-4.3-winOKMar 04 2025
R-4.3-macOKMar 04 2025

Exports:load_edge_assignmentload_edge_assignmentsmerge_edge_assignmentsmerge_edge_countsplot_edge_assignmentplot_merged_assignment

Dependencies:Cairoclicolorspacedata.tabledplyrfansifarvergenericsggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigplyrR6RColorBrewerRcppreshape2rlangscalesstringistringrtibbletidyselectutf8vctrsviridisLitewithr