Package: MetaComp 1.1.2

Pavel Senin

MetaComp: EDGE Taxonomy Assignments Visualization

Implements routines for metagenome sample taxonomy assignments collection, aggregation, and visualization. Accepts the EDGE-formatted output from GOTTCHA/GOTTCHA2, BWA, Kraken, MetaPhlAn, DIAMOND, and Pangia. Produces SVG and PDF heatmap-like plots comparing taxa abundances across projects.

Authors:Pavel Senin [aut, cre]

MetaComp_1.1.2.tar.gz
MetaComp_1.1.2.zip(r-4.5)MetaComp_1.1.2.zip(r-4.4)MetaComp_1.1.2.zip(r-4.3)
MetaComp_1.1.2.tgz(r-4.4-any)MetaComp_1.1.2.tgz(r-4.3-any)
MetaComp_1.1.2.tar.gz(r-4.5-noble)MetaComp_1.1.2.tar.gz(r-4.4-noble)
MetaComp_1.1.2.tgz(r-4.4-emscripten)MetaComp_1.1.2.tgz(r-4.3-emscripten)
MetaComp.pdf |MetaComp.html✨
MetaComp/json (API)

# Install 'MetaComp' in R:
install.packages('MetaComp', repos = c('https://seninp-bioinfo.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/seninp-bioinfo/metacomp/issues

On CRAN:

bioinformaticscomparative-genomicsedgeheatmapmetagenomicsvisualization

3.60 score 4 stars 7 scripts 192 downloads 2 mentions 6 exports 38 dependencies

Last updated 6 years agofrom:47d7f8536b. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 04 2024
R-4.5-winOKNov 04 2024
R-4.5-linuxOKNov 04 2024
R-4.4-winOKNov 04 2024
R-4.4-macOKNov 04 2024
R-4.3-winOKNov 04 2024
R-4.3-macOKNov 04 2024

Exports:load_edge_assignmentload_edge_assignmentsmerge_edge_assignmentsmerge_edge_countsplot_edge_assignmentplot_merged_assignment

Dependencies:Cairoclicolorspacedata.tabledplyrfansifarvergenericsggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigplyrR6RColorBrewerRcppreshape2rlangscalesstringistringrtibbletidyselectutf8vctrsviridisLitewithr