Package: MetaComp 1.1.2

Pavel Senin

MetaComp: EDGE Taxonomy Assignments Visualization

Implements routines for metagenome sample taxonomy assignments collection, aggregation, and visualization. Accepts the EDGE-formatted output from GOTTCHA/GOTTCHA2, BWA, Kraken, MetaPhlAn, DIAMOND, and Pangia. Produces SVG and PDF heatmap-like plots comparing taxa abundances across projects.

Authors:Pavel Senin [aut, cre]

MetaComp_1.1.2.tar.gz
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MetaComp_1.1.2.tgz(r-4.4-any)MetaComp_1.1.2.tgz(r-4.3-any)
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MetaComp.pdf |MetaComp.html✨
MetaComp/json (API)

Peer review:

Bug tracker:https://github.com/seninp-bioinfo/metacomp/issues

On CRAN:

bioinformaticscomparative-genomicsedgeheatmapmetagenomicsvisualization

6 exports 4 stars 1.53 score 38 dependencies 2 mentions 7 scripts 243 downloads

Last updated 6 years agofrom:47d7f8536b. Checks:OK: 7. Indexed: yes.

Exports:load_edge_assignmentload_edge_assignmentsmerge_edge_assignmentsmerge_edge_countsplot_edge_assignmentplot_merged_assignment

Dependencies:Cairoclicolorspacedata.tabledplyrfansifarvergenericsggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigplyrR6RColorBrewerRcppreshape2rlangscalesstringistringrtibbletidyselectutf8vctrsviridisLitewithr